PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001394
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 294aa    MW: 32951.6 Da    PI: 8.6697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001394genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
      Lus10001394 14 RGPWSPEEDAKLKDYIHRHGTGgNWIAFPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding38.72.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
      Lus10001394  69 GEFSDDEDRIICTLFANIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.199962IPR017930Myb domain
SuperFamilySSF466896.53E-2611109IPR009057Homeodomain-like
SMARTSM007171.7E-101364IPR001005SANT/Myb domain
PfamPF002492.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231569IPR009057Homeodomain-like
CDDcd001673.78E-91662No hitNo description
PROSITE profilePS5129420.85863117IPR017930Myb domain
SMARTSM007171.7E-1167115IPR001005SANT/Myb domain
PfamPF002493.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2370117IPR009057Homeodomain-like
CDDcd001673.25E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIH RHGTGGNWIA FPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFANIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
LPNPSHGRLP FHHPTNFHQI VLQSSPFSSS VLSYSNNSSS SLSVDPSSMT SPINPFKSNH  180
GNYNSSFNSN AMIPHQRQPH YQQQVKDGVL MFGSSGGGTT DHQASCSSSD GSSNINVHHH  240
HHHQHRGQVN EFDYEAEQLQ QLSSFNQMED YGFEEIKQLV STNSCNSNSL LLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381399.13e-92hypothetical protein POPTR_0006s12530g
TrEMBLU5GA633e-92U5GA63_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12530.19e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36